HMDB (Human Metabolome Database) - Comprehensive database of small or polar metabolites found in the human body.

RaMP (Relational Database of Metabolomics Pathways) - Integrated database with comprehensive annotations on biological pathways, structure/chemistry, disease and ontology annotations for genes, proteins, and metabolites.

Metabolomics Workbench - A comprehensive online resource for metabolomics data, analysis tools, and standards.

XCMS - A platform for the annotation and processing of metabolomics data

LION - Free online tool for Lipid Ontology Pathway Enrichment Analysis.

LIPID MAPS - Comprehensive database of lipid species found in the human body.  

MetaboAnalyst - A unified platform for metabolomics data processing, analysis and interpretation that allows for integration within workflows developed in R.

MetaboLights - A database for depositing metabolomics experiments and derived information, including raw and processed data.

MetaSpace - The platform for metabolite annotation of imaging mass spectrometry data